/articles/bio

# Copyright 2004 Chris Monson (shiblon@gmail.com)

#           2011 Andrew McNabb

#           2013 Krishna Kumar

#           2017 Holger Nahrstaedt

# Latest version available at http://www.bouncingchairs.net/oss

#

#    This file is part of ``Chris Monson's Free Software''.

#

#    ``Chris Monson's Free Software'' is free software; you can redistribute it

#    and/or modify it under the terms of the GNU General Public License as

#    published by the Free Software Foundation, Version 2.

#

#    ``Chris Monson's Free Software'' is distributed in the hope that it will

#    be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of

#    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General

#    Public License for more details.

#

#    You should have received a copy of the GNU General Public License along

#    with ``Chris Monson's Free Software''; if not, write to the Free Software

#    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

#

#    It is also available on the web at http://www.gnu.org/copyleft/gpl.html

#

#    Note that using this makefile to build your documents does NOT place them

#    under the GPL unless you, the author, specifically do so.  In other words,

#    I, Chris Monson, the copyright holder and author of this makefile,

#    consider it impossible to ``link'' to this makefile in any way covered by

#    the GPL.

#

#

# TO OBTAIN INSTRUCTIONS FOR USING THIS FILE, RUN:

#    make help

#

fileinfo	:= LaTeX Makefile

author		:= Chris Monson

version		:= 2.2.1-alpha10

#

.DEFAULT_GOAL	:= all

# Note that the user-global version is imported *after* the source directory,

# so that you can use stuff like ?= to get proper override behavior.

.PHONY: Makefile GNUmakefile Makefile.ini $(HOME)/.latex-makefile/Makefile.ini

-include Makefile.ini

-include $(HOME)/.latex-makefile/Makefile.ini

# Better names for these things

.PHONY: Variables.ini $(HOME)/.latex-makefile/Variables.ini

-include Variables.ini

-include $(HOME)/.latex-makefile/Variables.ini

#

# This can be pdflatex or latex - you can change this by adding the following line to your Makefile.ini:

# BUILD_STRATEGY := latex

#BUILD_STRATEGY		?= pdflatex

BUILD_STRATEGY		?= xelatex

BIB_STRATEGY		?= biblatex

#BIB_STRATEGY		?= bibtex

# This can be used to pass extra options to latex.

LATEX_OPTS		?=

#

# Sets LC_ALL=C, by default, so that the locale-aware tools, like sort, be

# # immune to changes to the locale in the user environment.

export LC_ALL		?= en_US.UTF-8

#

#

# If you specify sources here, all other files with the same suffix

# will be treated as if they were _include_ files.

#onlysources.tex	?= main.tex

#onlysources.lhs	?=

#onlysources.tex.sh	?=

#onlysources.tex.pl	?=

#onlysources.tex.py	?=

#onlysources.rst	?=

#onlysources.mp		?=

#onlysources.fig	?=

#onlysources.gpi	?=

#onlysources.dot	?=

#onlysources.xvg	?=

#onlysources.svg	?=

#onlysources.eps.gz	?=

#onlysources.eps	?=

#

# If you list files here, they will be treated as _include_ files

#includes.tex		?= file1.tex file2.tex

#includes.lhs		?=

#includes.tex.sh	?=

#includes.tex.pl	?=

#includes.tex.py	?=

#includes.rst		?=

#includes.mp		?=

#includes.fig		?=

#includes.gpi		?=

#includes.dot		?=

#includes.xvg		?=

#includes.svg		?=

#includes.eps.gz	?=

#includes.eps		?=

#

# If you list files or wildcards here, they will *not* be cleaned - default is

# to allow everything to be cleaned.

#neverclean		?= *.pdf

#

# Alternatively (recommended), you can add those lines to a Makefile.ini file

# and it will get picked up automatically without your having to edit this

# Makefile.

#

# KNOWN ISSUES:

# * The following occurs:

#   file with: \usepackage{named}\bibliographystyle{named}

#   Compile

#   change to: \usepackage{apalike}\bibliographystyle{apalike}

#   Compile again -- BARF!

#

#   The workaround: make clean-nographics; make

#

#   Note that we may not be able to fix this.  LaTeX itself barfs

#   on this, not the makefile.  The very first invocation of LaTeX

#   (when something like this has happened) reads the existing .aux

#   file and discovers invalid commands like \citeauthoryear that

#   are only valid in the package that was just removed.  It then

#   tries to parse them and explodes.  It's not at all clear to me

#   how to fix this.  I tried removing the .aux files on the first

#   run of LaTeX, but that necessarily requires more subsequent

#   rebuilds on common edits.  There does not appear to be a

#   graceful solution to this issue.

#

#

# CHANGES:

# Holger Nahrstaedt (2017-09-25):

# * Bumped version to 2.2.1-alpha10

# * Added XELATEX and LUALATEX to BUILD_STRATEGY

# * New option BIB_STRATEGY, can be biblatex or bibtex

# * Added all Authors to Copyright section

# * Added asymptote file generation

# * Added shell-escape to pdflatex, xelatex and lualatex

# Krishna Kumar (2013-11-27):

# * Added PS to rm_ext to remove PS files generated during LaTeX output

# Krishna Kumar (2013-11-26):

# * Changed PS_EMBED_OPTION ?= -dPDFSETTINGS=/prepress from /printer

#

# Chris Monson (2012-06-25):

# * Bumped version to 2.2.1-alpha9

# * Built with Holger Dell's changes to fix multiple unnecessary compilations.

# Chris Monson (2011-11-10):

# * Issue 144: Help patch from girard.nicolas applied

# Andrew McNabb (2011-09-30):

# * Bumped version to 2.2.1-alpha8

# * Issue 141: No font embedding for gnuplot when not doing pdf

# * Syntax error fixed for gpi handling code

# Chris Monson (2011-09-06):

# * Issue 140: clean mlt*, mlf*, and mtc* files

# * Issue 136: initial support for metapost files

# Chris Monson (2011-08-09):

# * Bumped version to 2.2.1-alpha7

# * Issue 138: existing .eps files now included correctly

# * Issue 139: added missing backslash to ps build rule

# Chris Monson (2011-07-20):

# * Added LATEX_OPTS

# Chris Monson (2011-06-23):

# * Bumped version to 2.2.1-alpha6

# * Issue 133: Set jobname to fix .fls generation to always have the source name

# * Removed unnecessary (?) double-invocation of cygpath

# Chris Monson (2011-06-16):

# * Added support for keeping .rst and .lhs tex intermediates around.

# * Separated scripts from source generation files (rst and lhs)

# * Fixed run-script problem for lhs2tex (was invoked incorrectly)

# * Issue 133: Fixed typo from literate Haskell support

# Chris Monson (2011-06-13):

# * Bumped version to 2.2.1-alpha5

# * Fixed problems with detecting graphics for very long source names.

# Chris Monson (2011-06-13):

# * Issue 134: name of self corrected for dependency graph

# * Issue 133: Added literate Haskell support (lhs2tex)

# Chris Monson (2011-05-31):

# * Rewrote specials (%%COMMENTS) to be easier to extend and parse.

# Chris Monson (2011-05-11):

# * Bumped version to 2.2.1-alpha4

# * Issue 129: nomenclature dependency fix

# Chris Monson (2011-05-09):

# * Bumped version to 2.2.1-alpha3

# * Issue 112: Cygpath fixes

# Chris Monson (2011-04-27):

# * Bumped version to 2.2.1-alpha2

# * Issue 126: Broken log parsing for latex pipeline

# * Fixed month in recent changes (had May, should be April)

# * Noticed problems with some existing parsing (colorizing errors, notably) and

#     fixed them.

# * New test case for specified graphic extensions.

# * Added .bb generation for .eps files (when extensionless in latex pipeline)

# Chris Monson (2011-04-22):

# * Bumped version to 2.2.1-alpha1

# * Issue 105: add support for format file detection and compilation

# Chris Monson (2011-04-20):

# * Bumped version to 2.2.0 (release!)

# Chris Monson (2011-04-19):

# * Bumped version to 2.2.0-rc15

# * Issue 125: infinite recursion with nomenclature files

# * Issue 125: removed .d as a target for .nls in get-log-index

# * Cleaned up invocation of run-makeindex to take an optional .ist instead of flags.

# Chris Monson (2011-04-06):

# * Bumped version to 2.2.0-rc14

# * Issue 121: Added Targets.ini and corresponding help text for it.

# * Issue 121: Added Variables.ini (Makefile.ini still works, though).

# * Issue 121: Added .DEFAULT_GOAL optional setting.

# * Issue 120: xindy compatibility

# Chris Monson (2011-03-16):

# * Bumped version to 2.2.0-rc13

# * Fixed a bug in kspewhich invocation - random characters and a missing pipe.

# * Added font embedding to gnuplot output.

# Chris Monson (2011-03-15):

# * Bumped version to 2.2.0-rc12

# * Issue 119: Annoying warning from which if Gnuplot not installed.

# * Fixed catchall error output to show more info from the log.  Cutting off the

#     first line is too jarring.

# * Issue 118: Better glossary support

# Chris Monson (2011-03-03):

# * Bumped version to 2.2.0-rc11

# * Issue 112: Fixed regression introduced by use of cygpath (ugly warnings)

# Chris Monson (2011-02-03):

# * Bumped version to 2.2.0-rc10

# * Issue 112: Added path normalization for cygwin systems

# * Fixed a bug in get-missing-inputs where we weren't specifying target files

# Chris Monson (2011-01-24):

# * Issue 111: Added .jpeg as a possible image extension

# Chris Monson (2011-01-21):

# * Issue 110: Long filenames not produced correctly in .d file

# * Fixed problem with unknown control sequence error parsing

# * Fixed problem with \r in fatal output (was interpreted as LF by echo)

# * Removed a spurious "hi"

# Chris Monson (2011-01-14):

# * Bumped version to 2.2.0-rc8

# * Issue 107: Removed comment with embedded newline, fixing MinGW on Windows 7.

# Chris Monson (2011-01-07):

# * Emit an error if .gpi.d files have dependencies with : in the name

# Chris Monson (2011-01-05):

# * Bumped version to 2.2.0-rc7

# * Issue 106: existing graphic dependencies not generated correctly

# Chris Monson (2011-01-04):

# * Issue 106: not cleaning eps log files properly

# * Issue 106: not rebuilding after creating .pdf graphics from .eps

# * Issue 94: svg going unnecessarily through eps (can't reproduce)

# Chris Monson (2010-12-31):

# * Issue 100: make hanging because of faulty graphics detection (sed bug)

# * Issue 108: do not ignore fatal errors from pdftex

# Chris Monson (2010-12-23):

# * Added gpi_global to gnuplot dependencies so that changes are detected

# Chris Monson (2010-12-20):

# * Updated build file to be smarter about Python version detection

# * Created a bunch of test files and supporting scripts

# * Issue 72: added apacite capaability (thanks to matkarat)

# Chris Monson (2010-11-23):

# * Changed to multi-part makefile build (split out sed scripts)

# * Added build script and supporting infrastructure

# * Updated test directory format

# * Added notes about needed test cases

# * Changed to use -file-line-error and fixed multiple inclusion/error bugs

# * Added run_sed.py to allow easy testing of sed scripts outside of make

# Chris Monson (2010-11-11):

# * Bumped version to 2.2.0-rc7

# * issue 92: broken hyperref driver detection fixed

# * issue 101: Broken inkscape conversion

# * issue 102: Broken specification of font size for gnuplot pdfcairo

# * Added KEEP_TEMP so that we can avoid deleting useful temporaries for debugging

# * Restructured gnuplot code to be easier to follow

# * Fixed a bug in convert-gpi where we were using $< instead of $1

# Chris Monson (2010-11-03):

# * Bumped version to 2.2.0-rc6

# * issue 96: Fix sed errors when using make variables in substitutions

# Chris Monson (2010-07-28):

# * Bumped version to 2.2.0-rc5 (rc4 is broken)

# * Bail out when we find the use of the import.sty package

# * Issue 90: Add -z to dvips invocation

# * Issue 67: Add xelatex support (thanks to Nikolai Prokoschenko for the patch!)

# * Issue 85: Add warning about make 3.80

# Chris Monson (2010-06-20):

# * Bumped version to 2.2.0-rc3

# * Attempt to fix bug with ! error detection (issue 88)

# * Added svg->pdf direct support (issue 89)

# Chris Monson (2010-04-28):

# * Bumped version to 2.2.0-rc2

# * Fixed %._show target

# Chris Monson (2010-04-08):

# * Bumped version to 2.2.0-rc1

# * Added back in the rst_style_file stuff that got broken when switching

#     rst -> tex to use the script mechanism

# Chris Monson (2010-03-23):

# * Bumped version to 2.2.0-beta8

# * Work on issue 76: bad backtick escape for some sed versions, failure

#     to clear out the hold buffer when outputting MISSING comment.

#     - Backed out 2>&1 to &> (doesn't work in sh)

#     - Backed out using . to source variables

# Chris Monson (2010-03-22):

# * Bumped version to 2.2.0-beta7

# * Issue 72: Fix latex/bibtex invocation order for annotated bib styles

# * Fixed informational output to reflect which LaTeX run we're on

# * Fixed graphic detection to include graphics that are already there in

#     .d files

# * Tightened up the .d file output to only make .d depend on graphic

#     *source* files.  This means that building foo.d no longer

#     builds all of the graphics files on which foo.tex depends.

#     Had to use .SECONDEXPANSION trickery to make it work.

# * Changed get-graphics to only accept a stem.

# * Fixed build-once logic for scripted .tex to work better

# * Made get-inputs sed script more maintainable.

# * Moved Makefile.ini import up higher.

# * Changed bare stems to not recursively invoke make

# * Updated diff output to be more silent everywhere

# * Added a MISSING comment to the .d file if stuff isn't found - forces

#     removal of .1st.make file, which often forces it to try again.

# * Fixed broken graphics-target function

# * Added sleep to .d file generation when stuff is missing - if it

#     builds too fast, make doesn't realize it needs to be reloaded,

#     and thus never discovers some deeper dependencies (especially

#     evident when graphics are included from scripted include

#     files).

# Chris Monson (2010-03-17):

# * Bumped version to 2.2.0-beta6

# * Fixed bareword builds to actually work (requires static patterns)

# * Fixed colorization to work with new paragraph stuff

# Chris Monson (2010-03-17):

# * Bumped version to 2.2.0-beta5

# * Fixed graphic detection to be much more focused - splits log file

#     into paragraphs before doing pattern matching.

# * Fixed make foo to work properly (recursively calls make foo.pdf)

# * Fixed gpi -> pdf generation to not waste time building .eps *after*

#     the pdf already exists.

# * Changed log copies to include MAKE_RESTARTS as part of the name.

# * Fixed missing include file detection (also makes use of the paragraph

#     stuff) to detect missing scripted include files.

# Chris Monson (2010-03-16):

# * Bumped version to 2.2.0-beta4

# * issue 70: .pdf not moved out of the way properly on first

#     compilation, resulting in early error detection failure.

# * issue 74: fixed broken error on missing .aux files: the

#     implementation was masking real errors.

# Chris Monson (2010-03-15):

# * Bumped version to 2.2.0-beta3

# * issue 71: Made the tput dependency optional

# * issue 73: Made .tex targets not pull in .d files (building them from

#     scripts should not require a .d)

# * issue 74: Output a much saner error when a .aux file is not produced

#     (e.g., when you are typing "make" without arguments in a

#     directory with included .tex files that are not named with

#     ._include_.)

# Chris Monson (2010-03-11):

# * Bumped version to 2.2.0-beta2

# * Fixed clean-graphics to get rid of intermediate .eps files that may

#     be hanging around

# * Added an automatic setting to use eps terminals in pdflatex mode for

#     gnuplot if it doesn't understand pdf.

# * issue 66: Removed grayscale generation via magic suffix.  Grayscale

#     generation is now only available via GRAY=1

# * issue 68: Added explicit handling of LC_ALL for locale-aware tools

#     like "sort"

# Chris Monson (2010-03-10):

# * Bumped version to 2.2.0-beta1

# * Fixed success message to handle output message in different places

# * Added name of produced file to success message

# Chris Monson (2010-03-10):

# * Bumped version to 2.2.0-alpha3

# * Added meaningful error message for wrong hyperref options

# * Added meaningful error message for incorrect graphics extensions

# Chris Monson (2010-03-09):

# * Bumped version to 2.2.0-alpha2

# * Updated graphics handling (gnuplot and fig generate pdf natively)

# * Changed xmgrace to output monochrome natively

# Chris Monson (2010-03-09):

# * Bumped version to 2.2.0-alpha1 - major change!

# * Support pdflatex natively and by default (issue 6 - a long time coming)

# * Add ability to have a single $HOME/.latex-makefile/Makefile.ini for

#     all invocations

# * Reworked graphic inclusion detection so that extensions need not be

#     specified for either build strategy (e.g.,

#     \includegraphics{test1.eps} -> \includegrahpics{test1})

# * Changed log format to include filenames and line numbers

# Chris Monson (2010-02-04):

# * Bumped version to 2.1.43

# * All of the following are for issue 63 (thanks to mojoh81):

# * Added documentation about fixing Makefile.ini default target

# * Added perl and python script targets

# * Fixed run logic to allow included .tex files to be scripted (the

#     run-again logic now detects missing .tex files, and the MV

#     command has been switched out for a command that only invokes

#     MV if the files exist)

# * Changed scripted generation to only run once per make invocation

# * Added dependency on expr

# Chris Monson (2010-01-19):

# * Bumped version to 2.1.42

# * issue 62: Added .brf extension to cleanable files (backrefs)

# Chris Monson (2010-01-07):

# * Bumped version to 2.1.41

# * issue 60: bad makeindex runs now error out on subsequent tries

# Chris Monson (2009-12-01):

# * Bumped version to 2.1.40

# * issue 36: build all indices (for e.g., splitidx usage)

# * issue 59: clean up all generated files (including indices)

# Chris Monson (2009-11-23):

# * Bumped version to 2.1.39

# * issue 57: change ps2pdf invocations to just use gs directly

# Chris Monson (2009-11-19):

# * Bumped version to 2.1.38

# * issue 57: Added some limited support for Cygwin (spaces in filenames)

# Chris Monson (2009-11-15):

# * Bumped version to 2.1.37

# * Removed svninfo, since this is now managed by mercurial

# * Fixed typo in changelist

# * Issue 52: added jpg->eps conversion (thanks to brubakee)

# * Issue 54: fix missing Overfull colorization due to lack of a blank

#     line preceding the first error.

# * Issue 51: remove head.tmp and body.tmp in make clean invocation

# * Issue 56: maintain multiple versions of log files (for debugging)

# Chris Monson (2009-11-14):

# * Bumped version to 2.1.36

# * Issues 53 and 49: added .brf, .mtc, and .maf to the cleanables

# Chris Monson (2009-11-05):

# * Bumped version to 2.1.35

# * Added nomenclature support (see issue 48)

# Chris Monson (2009-10-29):

# * Bumped version to 2.1.34

# * Fixed _out_ creation bug introduced in 2.1.33 (it was always created)

# * Fixed erroneous help output for $HOME in BINARY_TARGET_DIR

# * Changed contact email address - bring on the spam!

# Chris Monson (2009-10-21):

# * Bumped version to 2.1.33

# * Fixed issue 46, adding support for dot2tex (thanks to fdemesmay)

# * Made all_files.* settable in Makefile.ini (using ?= instead of :=)

# * Fixed issue 47, thanks to fdemesmay: add binary copy directory, copy

#     dvi, pdf, and ps if it exists

# Chris Monson (2009-09-25):

# * Bumped version to 2.1.32

# * Fixed so that a changed lol file will cause a rebuild

# * Added .lol files to the cleanable list

# Chris Monson (2009-09-08):

# * Bumped version to 2.1.31

# * Closed issue 43: evince doesn't notice pdf change w/out touch

# Chris Monson (2009-08-28):

# * Bumped version to 2.1.30

# * Closed issue 39: Capture multi-line log warnings/errors to output

# Chris Monson (2009-08-26):

# * Bumped version to 2.1.29

# * Closed issue 42: add svg support using inkscape

# Chris Monson (2009-08-17):

# * Bumped version to 2.1.28

# * Patch from paul.biggar for issue 38: package warnings are overlooked

# Chris Monson (2009-08-07):

# * Bumped version to 2.1.27

# * Included patch for issue 37 - removes pdf/ps files before copying,

#     allowing some broken viewers to see changes properly.

# Chris Monson (2009-05-15):

# * Bumped version to 2.1.26

# * Included patch for issue 9 from favonia - detects .fig changes for

#     pstex files during regular compilation, so long as the pstex

#     has been built at least once with make all-pstex.

# Chris Monson (2009-03-27):

# * Bumped version to 2.1.25

# * Cleaned up a bunch of variable setting stuff - more stuff is now

#     settable from Makefile.ini

# * Cleaned up documentation for various features, especially settable

#     variables.

# * issue 28: support for png -> eps conversion (it even looks good!)

# * issue 29: support for "neverclean" files in Makefile.ini

# * issue 30: make ps2pdf14 the default - fall back when not there

# Chris Monson (2009-03-09):

# * Bumped version to 2.1.24

# * issue 27: xmgrace support (thanks to rolandschulzhd)

# Chris Monson (2008-10-23):

# * Bumped version to 2.1.23

# * issue 23: fixed _check_programs to not use bash string subs

# Chris Monson (2008-09-02):

# * Bumped version to 2.1.22

# * Appled patch from Holger <yllohy@googlemail.com> to add include

#     sources and some documentation updates.

# * Updated backup_patterns to be a bit more aggressive (also thanks to

#     Holger)

# Chris Monson (2008-08-30):

# * Bumped version to 2.1.21

# * Added ability to specify onlysources.* variables to indicate the only

#     files that should *not* be considered includes.  Thanks to Holger

#     <yllohy@googlemail.com> for this patch.

# * Added an automatic include of Makefile.ini if it exists.  Allows

#     settings to be made outside of this makefile.

# Chris Monson (2008-05-21):

# * Bumped version to 2.1.20

# * Added manual pstex compilation support (run make all-pstex first)

# * Removed all automatic pstex support.  It was totally breaking

#     everything and is very hard to incorporate into the makefile

#     concept because it requires LaTeX to *fail* before it can

#     determine that it needs the files.

# Chris Monson (2008-04-17):

# * Bumped version to 2.1.19

# * Changed the pstex build hack to be on by default

# Chris Monson (2008-04-09):

# * Bumped version to 2.1.18

# * issue 16: fixed pstex build problems, seems nondeterministic.  Added

#     gratuitious hack for testing: set PSTEX_BUILD_ALL_HACK=1.

# Chris Monson (2008-04-09):

# * Bumped version to 2.1.17

# * issue 20: fixed accumulation of <pid>*.make files - wildcard was

#     refusing to work on files that are very recently created.

# Chris Monson (2008-04-02):

# * Bumped version to 2.1.16

# * issue 19: Removed the use of "type" to fix broken "echo" settings

# Chris Monson (2008-03-27):

# * Bumped version to 2.1.15

# * issue 18: Favors binary echo over builtin, as binary understands -n

# * issue 16: Fixed handling of missing pstex_t files in the log

# * issue 9: Added .SECONDARY target for .pstex files

# Chris Monson (2008-03-21):

# * Bumped version to 2.1.14

# * Fixed broken aux file flattening, which caused included bibs to be

#     missed.

# Chris Monson (2008-03-20):

# * Bumped version to 2.1.13

# * Changed error output colorization to show errors for missing files

#     that are not graphics files.

# Chris Monson (2008-03-20):

# * Bumped version to 2.1.12

# * Fixed a regression introduced in r28 that makes bibtex fail when

#     there is no index file present

# Chris Monson (2008-03-03):

# * Bumped version to 2.1.11

# * Fixed issue 11 (handle index files, reported by abachn)

# * Cleaned up some comments and help text

# Chris Monson (2008-01-24):

# * Bumped version to 2.1.10

# * Fixed to work when 'sh' is a POSIX shell like 'dash'

# Chris Monson (2007-12-12):

# * Bumped version to 2.1.9

# * Fixed documentation and dependency graph for pstex files

# Chris Monson (2007-12-12):

# * Bumped version to 2.1.8

# * Added basic pstex_t support for fig files (Issue 9 by favonia)

#     I still suggest that psfrag be used instead.

# Chris Monson (2007-10-16):

# * Bumped version to 2.1.7

# * Removed todo item: allow other comment directives for rst conversion

# * Added ability to use global rst style file _rststyle_._include_.tex

# * Added help text to that effect

# Chris Monson (2007-05-20):

# * Bumped version to 2.1.6

# * Changed default paper size for rst files

# * Added todo item: fix paper size for rst files

# * Added todo item: allow other comment directives for rst conversion

# Chris Monson (2007-04-02):

# * Bumped version to 2.1.5

# * Addressed Issue 7, incorrect .gpi.d generation in subdirectories

# Chris Monson (2007-03-28):

# * Bumped version to 2.1.4

# * Fixed syntax error in dot output

# Chris Monson (2007-03-01):

# * Bumped version to 2.1.3

# * Added reST to the included documentation

# * Fixed graphics and script generation to be settable in the

#     environment.

# Chris Monson (2007-02-23):

# * Bumped version to 2.1.2

# * Added the ability to generate .tex files from .rst files

# Chris Monson (2006-10-17):

# * Bumped version to 2.1.1

# * Fixed includes from subdirectories (sed-to-sed slash escape problem)

# Chris Monson (2006-10-05):

# * Bumped version to 2.1.0 (pretty serious new feature added)

# * New feature: bib files can now be anywhere on the BIBINPUTS path

# * New programs: kpsewhich (with tetex) and xargs (BSD)

# Chris Monson (2006-09-28):

# * Bumped version to 2.0.9

# * Added ability to parse more than one bibliography

# Chris Monson (2006-06-01):

# * Bumped version to 2.0.8

# * Added .vrb to the list of cleaned files

# Chris Monson (2006-04-26):

# * Bumped version to 2.0.7

# * Fixed so that clean-nographics does not remove .gpi.d files

# * Removed jpg -> eps hack (not working properly -- just pre-convert)

# * Fixed so that postscript grayscale can be done with BSD sed

# Chris Monson (2006-04-25):

# * Bumped version to 2.0.6

# * Fixed so that changed toc, lot, lof, or out causes a rebuild

# Chris Monson (2006-04-17):

# * Bumped version to 2.0.5

# * Added jpg -> eps conversion target

# Chris Monson (2006-04-12):

# * Bumped version to 2.0.4

# * Fixed BSD sed invocation to not use \| as a branch delimiter

# * Added a comment section on what is and is not allowed in BSD sed

# * Made paper size handling more robust while I was at it

# * Fixed postscript RGB grayscale to use a weighted average

# * Fixed postscript HSB grayscale to convert to RGB first

# * Fixed a problem with rebuilding .bbl files

# Chris Monson (2006-04-11):

# * Bumped version to 2.0.3

# * Fixed some BSD sed problems: can't use \n in substitutions

# Chris Monson (2006-04-10):

# * Bumped version to 2.0.2

# * Once again removed ability to create .tex files from scripts

# * \includeonly works again

# Chris Monson (2006-04-09):

# * Bumped version to 2.0.1

# * Fixed grayscale postscript handling to be more robust

# * Added ability to generate ._gray_. files from eps and eps.gz

# * Added ability to clean ._gray_.eps files created from .eps files

# Chris Monson (2006-04-07):

# * Bumped version to 2.0.0

# * Removed clunky ability to create included .tex files from scripts

# * Added note in the help about included tex scripting not working

# * Fixed the .eps generation to delete %.gpihead.make when finished

# * Abandoned designs to use shell variables to create sed scripts

# * Abandoned __default__.tex.sh idea: it causes recursion with %: .

# * Removed web page to-do.  All items are now complete.

# * Added better grayscale conversion for dot figures (direct ps fixup).

# * Include files can now be scripted (at the expense of \includeonly).

# * Updated dependency graph to contain better node names.

# Chris Monson (2006-04-06):

# * Bumped version to 2.0b3

# * Top level includes now fail if there is no rule to build them

# * A helpful message is printed when they do fail

# * Grayscale has been changed to be ._gray_, other phonies use _ now, too

# * Grayscale handling has been completed

# * Changed _include_stems target to _includes target.

# * Fixed _includes target to be useful by itself.

# * Removed the ability to specify clean and build targets at once

# * Verified that epsfig works fine with current code

# * Fixed included scripts so that they are added to the dep files

# * Fixed so that graphics includes don't happen if they aren't for gpi

# * Fixed dot output to allow grayscale.

# Chris Monson (2006-04-05):

# * Bumped version to 2.0b2

# * Removed automatic -gray output.  It needs fixing in a bad way.

# * Revamped dependency creation completely.

# * Fixed conditional inclusion to actually work (test.nobuild.d, test.d).

# * Fixed clean target to remove log targets

# * Added the 'monochrome' word for gray gpi output

# * Added a _check_gpi_files target that checks for common problems

# * Changed the _version target into the version target (no _)

# * Added better handling of grayscale files.  Use the .gray.pdf target.

# * Fixed testing for rebuilds

# Chris Monson (2006-04-04):

# * Bumped version to 2.0b1

# * Changed colorization of output

# * Made .auxbbl and .auxtex .make files secondary targets

# * Shortened and simplified the final latex invocation loop

# * Added version-specific output ($$i vs. $$$$i) in latex loop

# * Added a build message for the first .dvi run (Building .dvi (0))

# * Removed some build messages that most people don't care about.

# * Simplified procedure for user-set colors -- simple text specification

# * Fixed diff output to...not output.

# * Fixed rerun bug -- detect not only when preceded with LaTeX Warning

# * Sped up gpi plotting

# * Added error handling and colorized output for gpi failure

# * Documented color changing stuff.

# * Now sort the flattened aux file to avoid false recompilation needs

# * Added clean-nographics target

# * Don't remove self.dvi file if self.aux is missing in the log

# * Clarified some code.  Did some very minor adjusting.

# Chris Monson (2006-04-03):

# * Bumped version to 2.0a7

# * Added .dvi and .ps files as secondary files.

# * Fixed handling of multiple run detection when includeonly is in use.

# * Added code to flatten .aux files.

# * Added more files as .SECONDARY prerequisites to avoid recompilation.

# * Fixed the inputs generation to be much simpler and to use pipes.

# * Added the dependency graph directly into the makefile.

# * Changed flatten-aux to remove \@writefile \relax \newlabel, etc.

# * Undid pipe changes with sed usage (BSD sed doesn't know -f-).

# * Added a _check_programs target that tells you what your system has.

# * Fixed an error in colorization that made unnecessary errors appear

# * Added view targets.

# * Updated help text.

# * Augmented cookies so that .aux can trigger .bbl and .dvi rebuilds

# * Added more informative error handling for dvips and ps2pdf

# Chris Monson (2006-04-02):

# * Bumped version to 2.0a6

# * Added indirection to .bbl dependencies to avoid rebuilding .bbl files

# * Streamlined the diff invocation to eliminate an existence test

# * Removed special shell quote escape variables

# * Moved includes to a more prominent location

# * Fixed .inputs.make to not contain .aux files

# * Fixed embedding to use a file instead of always grepping.

# * Added *.make.temp to the list of cleanable files

# * Fixed Ruby.  It should now be supported properly.

# * Now differentiate between all, default, and buildable files.

# * Fixed to bail out on serious errors.

# * Revised the handling of includable files.  Still working on it.

# Chris Monson (2006-03-31):

# * Bumped version to 2.0a5

# * Fixed a bug with LaTeX error detection (there can be spaces)

# * Added .bbl support, simplifying everything and making it more correct

# * Refactored some tests that muddy the code

# * Did a little cleanup of some shell loops that can safely be make loops

# * Added support for graphviz .dot files

# * Made _all_programs output easier to read

# * Added the ruby support that has long been advertised

# * Font embedding was screwed up for PostScript -- now implicit

# * Changed the generation of -gray.gpi files to a single command

# * Changed any make-generated file that is not included from .d to .make

# Chris Monson (2006-03-30):

# * Bumped version to 2.0a4

# * Fixed a bug with very long graphics file names

# * Added a todo entry for epsfig support

# * Fixed a bug paper size bug: sometimes more than one entry appears

# * Fixed DVI build echoing to display the number instead of process ID

# * DVI files are now removed on first invocation if ANY file is missing

# * Added a simple grayscale approach: if a file ends with -gray.gpi, it

#     is created from the corresponding .gpi file with a special

#     comment ##GRAY in its header, which causes coloring to be

#     turned off.

# * Fixed a bug in the handling of .tex.sh files.  For some reason I had

#     neglected to define file stems for scripted output.

# * Removed a trailing ; from the %.graphics dependencies

# * Added dvips embedding (I think it works, anyway)

# Chris Monson (2006-03-29):

# * Bumped version to 2.0a3

# * Fixed error in make 3.79 with MAKEFILE_LIST usage

# * Added the presumed filename to the _version output

# * Added a vim macro for converting sed scripts to make commands

# * Added gpi dependency support (plotting external files and loading gpi)

# * Allow .gpi files to be ignored if called .include.gpi or .nobuild.gpi

# * Fixed sed invocations where \+ was used.  BSD sed uses \{1,\}.

# Chris Monson (2006-03-28):

# * Bumped version to 2.0a2

# * Added SHELL_DEBUG and VERBOSE options

# * Changed the default shell back to /bin/sh (unset, in other words)

# * Moved .PHONY declarations closer to their targets

# * Moved help text into its own define block to obtain better formatting

# * Removed need for double-entry when adding a new program invocation

# * Moved .SECONDARY declaration closer to its relevant occurrence

# * Commented things more heavily

# * Added help text about setting terminal and output in gnuplot

# * Created more fine-grained clean targets

# * Added a %.graphics target that generates all of %'s graphics

# * Killed backward-compatible graphics generation (e.g., eps.gpi=gpi.eps)

# * For now, we're just GPL 2, not 3.  Maybe it will change later

# * Made the version and svninfo into variables

# Chris Monson (2006-03-27):

# * Bumped version to 2.0a1

# * Huge, sweeping changes -- automatic dependencies

#

# IMPORTANT!

#

# When adding to the following list, do not introduce any blank lines.  The

# list is extracted for documentation using sed and is terminated by a blank

# line.

#

# EXTERNAL PROGRAMS:

# = ESSENTIAL PROGRAMS =

# == Basic Shell Utilities ==

CAT		?= cat

CP		?= cp -f

DIFF		?= diff

ECHO		?= echo

EGREP		?= egrep

ENV		?= env

EXPR		?= expr

MV		?= mv -f

SED		?= sed

SORT		?= sort

TOUCH		?= touch

UNIQ		?= uniq

WHICH		?= which

XARGS		?= xargs

SLEEP		?= sleep

# == LaTeX (tetex-provided) ==

BIBTEX		?= bibtex

BIBER		?= biber

DVIPS		?= dvips

LATEX		?= latex

PDFLATEX	?= pdflatex --shell-escape

XELATEX		?= xelatex --shell-escape

LUALATEX    ?= lualatex --shell-escape

EPSTOPDF	?= epstopdf

MAKEINDEX	?= makeindex

XINDY		?= xindy

KPSEWHICH	?= kpsewhich

GS		?= gs

# = OPTIONAL PROGRAMS =

# == For MikTex under Cygwin, to get path names right

CYGPATH		?= cygpath

# == Makefile Color Output ==

TPUT		?= tput

# == TeX Generation ==

PERL		?= perl

PYTHON		?= python

RST2LATEX	?= rst2latex.py

LHS2TEX		?= lhs2tex

# == EPS Generation ==

CONVERT		?= convert	# ImageMagick

DOT		?= dot		# GraphViz

DOT2TEX		?= dot2tex	# dot2tex - add options (not -o) as needed

MPOST		?= mpost	# MetaPost

FIG2DEV		?= fig2dev	# XFig

GNUPLOT		?= gnuplot	# GNUplot

INKSCAPE	?= inkscape	# Inkscape (svg support)

XMGRACE		?= xmgrace	# XMgrace

PNGTOPNM	?= pngtopnm	# From NetPBM - step 1 for png -> eps

PPMTOPGM	?= ppmtopgm	# From NetPBM - (gray) step 2 for png -> eps

PNMTOPS		?= pnmtops	# From NetPBM - step 3 for png -> eps

GUNZIP		?= gunzip	# GZipped EPS

ASYMPTOTE   ?= asy

# == Beamer Enlarged Output ==

PSNUP		?= psnup

# == Viewing Stuff ==

VIEW_POSTSCRIPT	?= gv

VIEW_PDF	?= xpdf

VIEW_GRAPHICS	?= display

# Xindy glossaries

XINDYLANG	?= english

XINDYENC	?= utf8

# If cygpath is present, then we create a path-norm function that uses it,

# otherwise the function is just a no-op.  Issue 112 has details.

USE_CYGPATH := $(if $(shell $(WHICH) $(CYGPATH) 2>/dev/null),yes,)

define path-norm

$(if $(USE_CYGPATH),$(shell $(CYGPATH) -u "$1"),$1)

endef

# Command options for embedding fonts and postscript->pdf conversion

PS_EMBED_OPTIONS	?= -dPDFSETTINGS=/prepress -dEmbedAllFonts=true -dSubsetFonts=true -dMaxSubsetPct=100

PS_COMPATIBILITY	?= 1.4

# If set to something, will cause temporary files to not be deleted immediately

KEEP_TEMP	?=

# Defaults for GPI

DEFAULT_GPI_EPS_FONTSIZE	?= 22

DEFAULT_GPI_PDF_FONTSIZE	?= 12

# Style file for ReST

RST_STYLE_FILE			?= $(wildcard _rststyle_._include_.tex)

# This ensures that even when echo is a shell builtin, we still use the binary

# (the builtin doesn't always understand -n)

FIXED_ECHO	:= $(if $(findstring -n,$(shell $(ECHO) -n)),$(shell which echo),$(ECHO))

ECHO		:= $(if $(FIXED_ECHO),$(FIXED_ECHO),$(ECHO))

define determine-gnuplot-output-extension

$(if $(shell $(WHICH) $(GNUPLOT) 2>/dev/null),

     $(if $(findstring unknown or ambiguous, $(shell $(GNUPLOT) -e "set terminal pdf" 2>&1)),

	  eps, pdf),

     none)

endef

GNUPLOT_OUTPUT_EXTENSION	?= $(strip $(call determine-gnuplot-output-extension))

# Internal code should use this because of :=.  This means that the potentially

# expensive script invocation used to determine whether pdf is available will

# only be run once.

GPI_OUTPUT_EXTENSION := $(strip $(GNUPLOT_OUTPUT_EXTENSION))

# Note, if the terminal *does* understand fsize, then we expect this call to

# create a specific error here: "fsize: expecting font size".  Otherwise, we

# assume that fsize is not understood.

GPI_FSIZE_SYNTAX := $(strip \

$(if \

  $(filter pdf,$(GPI_OUTPUT_EXTENSION)),\

  $(if \

    $(findstring fsize: expecting font size,$(shell $(GNUPLOT) -e "set terminal pdf fsize" 2>&1)),\

    fsize FONTSIZE,\

    font ",FONTSIZE"),\

  FONTSIZE))

# Directory into which we place "binaries" if it exists.

# Note that this can be changed on the commandline or in Makefile.ini:

#

# Command line:

#   make BINARY_TARGET_DIR=$HOME/pdfs myfile.pdf

#

# Also, you can specify a relative directory (relative to the Makefile):

#   make BINARY_TARGET_DIR=pdfs myfile.pdf

#

# Or, you can use Makefile.ini:

#

#   BINARY_TARGET_DIR := $(HOME)/bin_out

#

BINARY_TARGET_DIR	?= _out_

RESTARTS		:= $(if $(MAKE_RESTARTS),$(MAKE_RESTARTS),0)

# SH NOTES

#

# On some systems, /bin/sh, which is the default shell, is not linked to

# /bin/bash.  While bash is supposed to be sh-compatible when invoked as sh, it

# just isn't.  This section details some of the things you have to stay away

# from to remain sh-compatible.

#

#	* File pattern expansion does not work for {}

#	* [ "$x" = "$y" ] has to be [ x"$x" x"$y" ]

#	* &> for stderr redirection doesn't work, use 2>&1 instead

#

# BSD SED NOTES

#

# BSD SED is not very nice compared to GNU sed, but it is the most

# commonly-invoked sed on Macs (being based on BSD), so we have to cater to

# it or require people to install GNU sed.  It seems like the GNU

# requirement isn't too bad since this makefile is really a GNU makefile,

# but apparently GNU sed is much less common than GNU make in general, so

# I'm supporting it here.

#

# Sad experience has taught me the following about BSD sed:

#

# 	* \+ is not understood to mean \{1,\}

# 	* \| is meaningless (does not branch)

# 	* \n cannot be used as a substitution character

# 	* ? does not mean \{0,1\}, but is literal

# 	* a\ works, but only reliably for a single line if subsequent lines

# 		have forward slashes in them (as is the case in postscript)

#

# For more info (on the Mac) you can consult

#

# man -M /usr/share/man re_format

#

# And look for the word "Obsolete" near the bottom.

#

# EXTERNAL PROGRAM DOCUMENTATION SCRIPT

#

# $(call output-all-programs,[<output file>])

define output-all-programs

	[ -f '$(this_file)' ] && \

	$(SED) \

		-e '/^[[:space:]]*#[[:space:]]*EXTERNAL PROGRAMS:/,/^$$/!d' \

		-e '/EXTERNAL PROGRAMS/d' \

		-e '/^$$/d' \

		-e '/^[[:space:]]*#/i\ '\

		-e 's/^[[:space:]]*#[[:space:]][^=]*//' \

		$(this_file) $(if $1,> '$1',) || \

	$(ECHO) "Cannot determine the name of this makefile."

endef

# If they misspell gray, it should still work.

GRAY	?= $(call get-default,$(GREY),)

#

# Utility Functions and Definitions

#

#

# Transcript

# For debug/testing purposes: writes a message to

# filename.transcript.make for each command that was run, including

# some human-readable justification for why it had to be run.

# For example: "Running latex (log-file indicated that this is necessary)"

# Set WRITE_TRANSCRIPT to something to activate

WRITE_TRANSCRIPT ?=

# Set reason for the next run call

# $(call set-run-reason,message)

set-run-reason = export run_reason="$1"

# Log command to the transcript file

# $(call set-run-reason,command,job_name)

define transcript

$(if $(WRITE_TRANSCRIPT), \

	$(ECHO) "Running $1 ($$run_reason)" >> $2.transcript.make; \

	export run_reason="", \

	$(sh_true))

endef

# Don't call this directly - it is here to avoid calling wildcard more than

# once in remove-files.

remove-files-helper	= $(if $1,$(RM) $1,$(sh_true))

# $(call remove-files,file1 file2)

remove-files		= $(call remove-files-helper,$(wildcard $1))

# Removes all cleanable files in the given list

# $(call clean-files,file1 file2 file3 ...)

# Works exactly like remove-files, but filters out files in $(neverclean)

clean-files		= \

	$(call remove-files-helper,$(call cleanable-files,$(wildcard $1)))

# Outputs all generated files to STDOUT, along with some others that are

# created by these (e.g., .idx files end up producing .ilg and .ind files).

# Discovered by reading *.fls OUTPUT lines and producing corresponding .ind

# filenames as needed.

#

# $(call get-generated-names,<source recorder file (*.fls)>)

define get-generated-names

[ -f '$1' ] && \

$(SED) \

	-e '/^OUTPUT /{' \

	-e '  s///' \

	-e '  p' \

	-e '  s/\.idx/\.ind/p' \

	-e '  s/\.ind/\.ilg/p' \

	-e '}' \

	-e 'd' \

	'$1' \

| $(SORT) | $(UNIQ)

endef

# This removes files without checking whether they are there or not.  This

# sometimes has to be used when the file is created by a series of shell

# commands, but there ends up being a race condition: make doesn't know about

# the file generation as quickly as the system does, so $(wildcard ...) doesn't

# work right.  Blech.

# $(call remove-temporary-files,filenames)

remove-temporary-files	= $(if $(KEEP_TEMP),:,$(if $1,$(RM) $1,:))

# Create an identifier from a file name

# $(call cleanse-filename,filename)

cleanse-filename	= $(subst .,_,$(subst /,__,$1))

# Escape dots

# $(call escape-fname-regex,str)

escape-fname-regex	= $(subst /,\\/,$(subst .,\\.,$1))

# Test that a file exists

# $(call test-exists,file)

test-exists		= [ -e '$1' ]

# $(call test-not-exists,file)

test-not-exists   = [ ! -e '$1' ]

# $(call move-files,source,destination)

move-if-exists		= $(call test-exists,$1) && $(MV) '$1' '$2'

# Copy file1 to file2 only if file2 doesn't exist or they are different

# $(call copy-if-different,sfile,dfile)

copy-if-different	= $(call test-different,$1,$2) && $(CP) '$1' '$2'

copy-if-exists		= $(call test-exists,$1) && $(CP) '$1' '$2'

move-if-different	= $(call test-different,$1,$2) && $(MV) '$1' '$2'

replace-if-different-and-remove	= \

	$(call test-different,$1,$2) \

	&& $(MV) '$1' '$2' \

	|| $(call remove-files,'$1')

# Note that $(DIFF) returns success when the files are the SAME....

# $(call test-different,sfile,dfile)

test-different		= ! $(DIFF) -q '$1' '$2' >/dev/null 2>&1

test-exists-and-different	= \

	$(call test-exists,$2) && $(call test-different,$1,$2)

# Return value 1, or value 2 if value 1 is empty

# $(call get-default,<possibly empty arg>,<default value if empty>)

get-default	= $(if $1,$1,$2)

# Copy a file and log what's going on

# $(call copy-with-logging,<source>,<target>)

define copy-with-logging

if [ -d '$2/' ]; then \

	if $(CP) '$1' '$2/'; then \

		$(ECHO) "$(C_INFO)Copied '$1' to '$2/'$(C_RESET)"; \

	else \

		$(ECHO) "$(C_ERROR)Failed to copy '$1' to '$2/'$(C_RESET)"; \

	fi; \

fi

endef

# Gives a reassuring message about the failure to find include files

# $(call include-message,<list of include files>)

define include-message

$(strip \

$(if $(filter-out $(wildcard $1),$1),\

	$(shell $(ECHO) \

	"$(C_INFO)NOTE: You may ignore warnings about the"\

	"following files:" >&2;\

	$(ECHO) >&2; \

	$(foreach s,$(filter-out $(wildcard $1),$1),$(ECHO) '     $s' >&2;)\

	$(ECHO) "$(C_RESET)" >&2)

))

endef

# Characters that are hard to specify in certain places

space		:= $(empty) $(empty)

colon		:= \:

comma		:= ,

# Useful shell definitions

sh_true		:= :

sh_false	:= ! :

# Clear out the standard interfering make suffixes

.SUFFIXES:

# Turn off forceful rm (RM is usually mapped to rm -f)