Commit message (Collapse) | Author | Age | Files | Lines | |
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* | Code from Harish (largely untested)harish | Suren A. Chilingaryan | 2022-07-26 | 26 | -45/+4103 |
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* | reader: turn warnings to errors | Tomas Farago | 2021-12-17 | 1 | -6/+8 |
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* | read: check sizes on get_meta | Tomas Farago | 2021-12-17 | 1 | -17/+16 |
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* | horizontal-interpolate: add use-one-sided-gradient | Tomas Farago | 2021-12-15 | 2 | -7/+75 |
| | | | | | Which gives finer contol over what happens when the mask spans to the border. | ||||
* | Merge pull request #216 from ufo-kit/image-step | Tomas Farago | 2021-12-07 | 7 | -116/+151 |
|\ | | | | | Image step | ||||
| * | read: remove retries | Tomas Farago | 2021-12-03 | 1 | -72/+3 |
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| * | read: add image-start and image-step properties | Tomas Farago | 2021-12-01 | 7 | -78/+182 |
| | | | | | | | | to skip images in multi-image files. Fixes #164. | ||||
* | | retrieve-phase: Add multi-distance CTF support | Tomas Farago | 2021-12-03 | 2 | -26/+178 |
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* | reader: handle large y-step and small height | Tomas Farago | 2021-11-10 | 2 | -3/+5 |
| | | | | extreme cases like y-step=20 and height=1 resulted in a segfault. | ||||
* | Merge pull request #214 from harishkumar-harihara/add-stacked-backproject | Tomas Farago | 2021-10-19 | 6 | -0/+1156 |
|\ | | | | | add stacked-backproject | ||||
| * | add stacked-backproject | harishkumar-harihara | 2021-10-17 | 6 | -0/+1156 |
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* | | flatten: complain when input is 2D | Tomas Farago | 2021-10-19 | 1 | -0/+7 |
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* | | stack: force nonfactor generation | Tomas Farago | 2021-09-27 | 1 | -3/+23 |
|/ | | | | | | | | If the number of images in the stack hadn't been a divisor of the number of input images, the last images would have been dropped. This makes sure all images are processed and fills the last positions of the stack (when the total number of stacked images starts to exceed the number of input images) with arbitrary previous images. Fixes #210. | ||||
* | pad: Add mirrored_repeat to the list | Tomas Farago | 2021-09-09 | 1 | -2/+2 |
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* | stripe-filter: add vertical sigma parameter | Tomas Farago | 2021-09-09 | 2 | -17/+41 |
| | | | | | | Which allows filtering of rings which are not perfectly straight or which are broader. vertical-sigma parameter roughly specifies the inclination from "perfectly vertical" stripes. | ||||
* | genreco: add spacial code for shifted source/det | Tomas Farago | 2021-03-26 | 1 | -20/+44 |
| | | | | not just for non-perpendicular detector. | ||||
* | opencl.cl: Add add, multiply and divide | Tomas Farago | 2021-01-28 | 1 | -0/+27 |
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* | general BP: don't hard-code local work size | Tomas Farago | 2020-11-11 | 1 | -1/+12 |
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* | read: make raw defaults the same as in raw-reader | Tomas Farago | 2020-08-28 | 1 | -3/+3 |
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* | write: add forgotten rescale to get_property | Tomas Farago | 2020-08-28 | 1 | -0/+3 |
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* | Don't force non-dash task names | Tomas Farago | 2020-08-14 | 2 | -17/+12 |
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* | Merge pull request #205 from ufo-kit/directional-phaseretrieval | Tomas Farago | 2020-06-25 | 2 | -12/+52 |
|\ | | | | | phase retrieval: enable separate x and y distance | ||||
| * | phase retrieval: enable separate x and y distance | Tomas Farago | 2020-06-04 | 2 | -12/+52 |
| | | | | | | | | fixes #203 | ||||
* | | Fix undefined CL_TARGET_OPENCL_VERSION warning | Tomas Farago | 2020-06-12 | 99 | -3/+98 |
|/ | | | | | | This is hardcoded to 120 (= OpenCL 1.2) because nvidia does not support later standards until 3.0 comes around and we do not make use of later features anyway. | ||||
* | backproject: unroll for navi10 | Matthias Vogelgesang | 2020-05-23 | 1 | -0/+3 |
| | | | | | With that an RX 5600 XT achieves ~22 slices/s according to the benchmark protocol from https://tomopedia.github.io/software/ufo. | ||||
* | Disable copying of opencl-reduce task | Tomas Farago | 2020-05-18 | 1 | -0/+22 |
| | | | | because one processing node needs all the inputs to reduce properly. | ||||
* | sliding-stack: allow ordering items | Tomas Farago | 2020-04-08 | 1 | -2/+24 |
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* | Merge pull request #198 from ufo-kit/sliding-window | Tomas Farago | 2020-04-03 | 4 | -0/+286 |
|\ | | | | | Add sliding-stack task | ||||
| * | Add sliding-stack task | Tomas Farago | 2020-03-20 | 4 | -0/+286 |
| | | | | | | | | fixes #196. | ||||
* | | GBP: complain if not enough projections come | Tomas Farago | 2020-03-31 | 1 | -1/+7 |
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* | Increase property limits to 32768 | Tomas Farago | 2020-03-13 | 10 | -21/+21 |
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* | Add power-spectrum filter | Tomas Farago | 2020-03-06 | 5 | -5/+242 |
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* | complex: add c_abs_squared kernel | Tomas Farago | 2020-03-05 | 1 | -0/+13 |
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* | Make c_conj work with opencl task | Tomas Farago | 2020-02-25 | 1 | -2/+4 |
| | | | | fixes #193 | ||||
* | write: handle stdout correctly | Tomas Farago | 2020-02-18 | 1 | -4/+12 |
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* | loop: check if temporary is set before unref | Tomas Farago | 2020-02-17 | 1 | -1/+4 |
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* | Do not release NULL pointers | Tomas Farago | 2020-02-14 | 7 | -13/+41 |
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* | gpb: add RTX8000 properties | Tomas Farago | 2020-02-14 | 1 | -0/+1 |
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* | gbp: fix compute mode enum | Tomas Farago | 2020-02-14 | 1 | -3/+3 |
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* | Fix static enum names | Tomas Farago | 2020-02-14 | 17 | -24/+24 |
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* | Merge pull request #184 from ufo-kit/find-large-spots | Tomas Farago | 2020-02-05 | 6 | -0/+664 |
|\ | | | | | Find large spots | ||||
| * | find-large-spots: add spot-threshold-mode property | Tomas Farago | 2020-02-05 | 2 | -5/+46 |
| | | | | | | | | | | | | which enables users to choose if pixels below or above the threshold should be selected, or if the absolute value of the pixel should be taken for comparison. | ||||
| * | Add FindLargeSpots | Tomas Farago | 2020-02-05 | 6 | -0/+623 |
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* | | genreco: limit memory to 4 GB | Tomas Farago | 2020-02-05 | 1 | -1/+3 |
|/ | | | | | because even if a card claims to be able to allocate more we get errors if that number is larger than 4 GB. | ||||
* | nlm: use fast algorithm by default | Tomas Farago | 2020-02-05 | 1 | -1/+1 |
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* | NLM: Put common things to src/common | Tomas Farago | 2020-02-05 | 7 | -90/+191 |
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* | NLM: Make sure local size is power of 2 | Tomas Farago | 2020-02-05 | 1 | -13/+25 |
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* | NLM: clean up Gauss window creation and deletion | Tomas Farago | 2020-02-05 | 1 | -18/+5 |
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* | NLM: use fmax (0.0f, value) only at the end | Tomas Farago | 2020-02-05 | 1 | -5/+3 |
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* | NLM: Add estimate-sigma | Tomas Farago | 2020-02-05 | 3 | -20/+183 |
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