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authorWillem Jan Palenstijn <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
committerwpalenst <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
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+-----------------------------------------------------------------------
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox")
+
+Copyright: iMinds-Vision Lab, University of Antwerp
+License: Open Source under GPLv3
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+ http://code.google.com/p/astra-toolbox/
+-----------------------------------------------------------------------
+
+
+The ASTRA Toolbox is a MATLAB toolbox of high-performance GPU primitives
+for 2D and 3D tomography.
+
+We support 2D parallel and fan beam geometries, and 3D parallel and cone beam.
+All of them have highly flexible source/detector positioning.
+
+A large number of 2D and 3D algorithms are available, including FBP, SIRT,
+SART, CGLS.
+
+The basic forward and backward projection operations are GPU-accelerated,
+and directly callable from MATLAB to enable building new algorithms.
+
+
+
+
+Documentation / samples:
+-------------------------
+
+See the matlab code samples in samples/ and on
+http://code.google.com/p/astra-toolbox/ .
+
+
+
+
+
+Installation instructions:
+---------------------------
+
+
+Windows, binary:
+-----------------
+
+Add the mex and tools subdirectories to your matlab path.
+
+
+
+Linux, from source:
+--------------------
+
+Requirements: g++, boost, CUDA (driver+toolkit), matlab
+
+cd build/linux
+./configure --with-cuda=/usr/local/cuda \
+ --with-matlab=/usr/local/MATLAB/R2012a \
+ --prefix=/usr/local/astra
+make
+make install
+Add /usr/local/astra/lib to your LD_LIBRARY_PATH.
+Add /usr/local/astra/matlab and its subdirectories (tools, mex)
+ to your matlab path.
+
+
+NB: Each matlab version only supports a specific range of g++ versions.
+Despite this, if you have a newer g++ and if you get errors related to missing
+GLIBCXX_3.4.xx symbols, it is often possible to work around this requirement
+by deleting the version of libstdc++ supplied by matlab in
+MATLAB_PATH/bin/glnx86 or MATLAB_PATH/bin/glnxa64 (at your own risk).
+
+
+Windows, from source using Visual Studio 2008:
+-----------------------------------------------
+
+Requirements: Visual Studio 2008, boost, CUDA (driver+toolkit), matlab.
+Note that a .zip with all required (and precompiled) boost files is
+ available from our website.
+
+Set the environment variable MATLAB_ROOT to your matlab install location.
+Open astra_vc08.sln in Visual Studio.
+Select the appropriate solution configuration.
+ (typically Release_CUDA|win32 or Release_CUDA|x64)
+Build the solution.
+Install by copying AstraCuda32.dll or AstraCuda64.dll from bin/ and
+ all .mexw32 or .mexw64 files from bin/Release_CUDA or bin/Debug_CUDA
+ and the entire matlab/tools directory to a directory to be added to
+ your matlab path.
+
+
+References:
+------------
+
+If you use parallel beam GPU code for your research, we would appreciate it if
+you would refer to the following paper:
+
+W. J. Palenstijn, K J. Batenburg, and J. Sijbers, "Performance improvements
+for iterative electron tomography reconstruction using graphics processing
+units (GPUs)", Journal of Structural Biology, vol. 176, issue 2, pp. 250-253,
+2011
+